change #include "commands.h" to <jtag/commands.h>

Changes from the flat namespace to heirarchical one.  Instead of writing:

	#include "commands.h"

the following form should be used.

	#include <jtag/commands.h>

The exception is from .c files in the same directory.

src/jtag/drivers/amt_jtagaccel.c

@@ -22,7 +22,7 @@
 #endif
 
 #include "interface.h"
-#include "commands.h"
+#include <jtag/commands.h>
 
 
 #if PARPORT_USE_PPDEV == 1

src/jtag/drivers/arm-jtag-ew.c

@@ -23,7 +23,7 @@
 #endif
 
 #include "interface.h"
-#include "commands.h"
+#include <jtag/commands.h>
 #include <usb.h>
 #include "usb_common.h"
 

src/jtag/drivers/bitbang.c

@@ -26,7 +26,7 @@
 
 #include "bitbang.h"
 #include "interface.h"
-#include "commands.h"
+#include <jtag/commands.h>
 
 /**
  * Function bitbang_stableclocks

src/jtag/drivers/bitq.h

@@ -20,7 +20,7 @@
 #ifndef BITQ_H
 #define BITQ_H
 
-#include "commands.h"
+#include <jtag/commands.h>
 
 struct bitq_interface {
 	// function to enqueueing low level IO requests

src/jtag/drivers/ft2232.c

@@ -42,7 +42,7 @@
 
 /* project specific includes */
 #include "interface.h"
-#include "commands.h"
+#include <jtag/commands.h>
 #include <helper/time_support.h>
 
 #if IS_CYGWIN == 1

src/jtag/drivers/gw16012.c

@@ -22,7 +22,7 @@
 #endif
 
 #include "interface.h"
-#include "commands.h"
+#include <jtag/commands.h>
 
 
 #if 1

src/jtag/drivers/jlink.c

@@ -26,7 +26,7 @@
 #endif
 
 #include "interface.h"
-#include "commands.h"
+#include <jtag/commands.h>
 #include "usb_common.h"
 
 

src/jtag/drivers/minidriver_imp.h

@@ -21,7 +21,7 @@
 #ifndef MINIDRIVER_IMP_H
 #define MINIDRIVER_IMP_H
 
-#include "commands.h"
+#include <jtag/commands.h>
 
 static inline void interface_jtag_alloc_in_value32(struct scan_field *field)
 {

src/jtag/drivers/rlink.c

@@ -29,7 +29,7 @@
 
 /* project specific includes */
 #include "interface.h"
-#include "commands.h"
+#include <jtag/commands.h>
 #include "rlink.h"
 #include "rlink_st7.h"
 #include "rlink_ep1_cmd.h"

src/jtag/drivers/usbprog.c

@@ -35,7 +35,7 @@
 #endif
 
 #include "interface.h"
-#include "commands.h"
+#include <jtag/commands.h>
 #include "usb_common.h"
 
 

src/jtag/drivers/vsllink.c

@@ -27,7 +27,7 @@
 #endif
 
 #include "interface.h"
-#include "commands.h"
+#include <jtag/commands.h>
 #include "usb_common.h"
 
 //#define _VSLLINK_IN_DEBUG_MODE_