diff --git a/src/jtag/drivers/sysfsgpio.c b/src/jtag/drivers/sysfsgpio.c
index 5535c71d8..24dc4bc92 100644
--- a/src/jtag/drivers/sysfsgpio.c
+++ b/src/jtag/drivers/sysfsgpio.c
@@ -561,6 +561,8 @@ static void cleanup_all_fds(void)
 	cleanup_fd(tdo_fd, tdo_gpio);
 	cleanup_fd(trst_fd, trst_gpio);
 	cleanup_fd(srst_fd, srst_gpio);
+	cleanup_fd(swclk_fd, swclk_gpio);
+	cleanup_fd(swdio_fd, swdio_gpio);
 }
 
 static bool sysfsgpio_jtag_mode_possible(void)