655 lines
17 KiB
C++
655 lines
17 KiB
C++
/*
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* Copyright (C) 2012 Thorsten Liebig (Thorsten.Liebig@gmx.de)
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*
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* This program is free software: you can redistribute it and/or modify
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* it under the terms of the GNU General Public License as published by
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* the Free Software Foundation, either version 3 of the License, or
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* (at your option) any later version.
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*
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* This program is distributed in the hope that it will be useful,
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* but WITHOUT ANY WARRANTY; without even the implied warranty of
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* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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* GNU General Public License for more details.
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*
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* You should have received a copy of the GNU General Public License
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* along with this program. If not, see <http://www.gnu.org/licenses/>.
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*/
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#include "sar_calculation.h"
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#include "cfloat"
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#include "array_ops.h"
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#include "global.h"
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SAR_Calculation::SAR_Calculation()
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{
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m_Vx_Used = NULL;
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m_Vx_Valid = NULL;
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m_DebugLevel = 0;
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SetAveragingMethod(SIMPLE, true);
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Reset();
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}
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void SAR_Calculation::Reset()
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{
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Delete3DArray(m_Vx_Used,m_numLines);
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m_Vx_Used = NULL;
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Delete3DArray(m_Vx_Valid,m_numLines);
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m_Vx_Valid = NULL;
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m_avg_mass = 0;
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m_numLines[0]=m_numLines[1]=m_numLines[2]=0;
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m_cellWidth[0]=m_cellWidth[1]=m_cellWidth[2]=NULL;
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m_cell_volume = NULL;
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m_cell_density = NULL;
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m_cell_conductivity = NULL;
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m_E_field = NULL;
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m_J_field = NULL;
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Delete3DArray(m_Vx_Used,m_numLines);
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m_Vx_Used = NULL;
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Delete3DArray(m_Vx_Valid,m_numLines);
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m_Vx_Valid = NULL;
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}
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void SAR_Calculation::SetAveragingMethod(string method, bool silent)
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{
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if (method.compare("IEEE_C95_3")==0)
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return SetAveragingMethod(IEEE_C95_3, silent);
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if (method.compare("IEEE_62704")==0)
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return SetAveragingMethod(IEEE_62704, silent);
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if (method.compare("SIMPLE")==0)
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return SetAveragingMethod(SIMPLE, silent);
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cerr << __func__ << ": Error, """ << method << """ is an unknown averaging method..." << endl;
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// unknown method, fallback to simple
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SetAveragingMethod(SIMPLE, false);
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}
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void SAR_Calculation::SetAveragingMethod(SARAveragingMethod method, bool silent)
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{
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if (method==IEEE_62704)
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{
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m_massTolerance = 0.0001;
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m_maxMassIterations = 100;
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m_maxBGRatio = 0.1;
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m_markPartialAsUsed = false;
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m_UnusedRelativeVolLimit = 1.05;
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m_IgnoreFaceValid = false;
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if (!silent)
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cerr << __func__ << ": Setting averaging method to IEEE_62704" << endl;
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return;
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}
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else if (method==IEEE_C95_3)
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{
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m_massTolerance = 0.05;
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m_maxMassIterations = 100;
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m_maxBGRatio = 1;
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m_markPartialAsUsed = true;
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m_UnusedRelativeVolLimit = 1;
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m_IgnoreFaceValid = false;
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if (!silent)
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cerr << __func__ << ": Setting averaging method to IEEE_C95_3" << endl;
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return;
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}
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else if (method==SIMPLE)
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{
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m_massTolerance = 0.05;
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m_maxMassIterations = 100;
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m_maxBGRatio = 1;
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m_markPartialAsUsed = true;
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m_UnusedRelativeVolLimit = 1;
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m_IgnoreFaceValid = true;
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if (!silent)
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cerr << __func__ << ": Setting averaging method to SIMPLE" << endl;
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return;
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}
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cerr << __func__ << ": Error, unknown averaging method..." << endl;
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// unknown method, fallback to simple
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SetAveragingMethod(SIMPLE, false);
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}
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void SAR_Calculation::SetNumLines(unsigned int numLines[3])
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{
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Delete3DArray(m_Vx_Used,m_numLines);
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m_Vx_Used = NULL;
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Delete3DArray(m_Vx_Valid,m_numLines);
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m_Vx_Valid = NULL;
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for (int n=0;n<3;++n)
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m_numLines[n]=numLines[n];
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}
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void SAR_Calculation::SetCellWidth(float* cellWidth[3])
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{
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for (int n=0;n<3;++n)
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m_cellWidth[n]=cellWidth[n];
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}
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float*** SAR_Calculation::CalcSAR(float*** SAR)
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{
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if (CheckValid()==false)
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{
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cerr << "SAR_Calculation::CalcSAR: SAR calculation is invalid due to missing values... Abort..." << endl;
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return NULL;
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}
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if (m_avg_mass<=0)
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return CalcLocalSAR(SAR);
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return CalcAveragedSAR(SAR);
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}
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bool SAR_Calculation::CheckValid()
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{
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for (int n=0;n<3;++n)
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if (m_cellWidth[n]==NULL)
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return false;
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if (m_E_field==NULL)
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return false;
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if ((m_J_field==NULL) && (m_cell_conductivity==NULL))
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return false;
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if (m_cell_density==NULL)
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return false;
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if (m_avg_mass<0)
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return false;
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return true;
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}
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double SAR_Calculation::CalcSARPower()
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{
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if (CheckValid()==false)
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{
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cerr << "SAR_Calculation::CalcSARPower: SAR calculation is invalid due to missing values... Abort..." << endl;
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return 0;
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}
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double power=0;
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unsigned int pos[3];
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for (pos[0]=0; pos[0]<m_numLines[0]; ++pos[0])
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{
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for (pos[1]=0; pos[1]<m_numLines[1]; ++pos[1])
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{
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for (pos[2]=0; pos[2]<m_numLines[2]; ++pos[2])
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{
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power += CalcLocalPowerDensity(pos)*CellVolume(pos);
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}
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}
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}
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return power;
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}
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double SAR_Calculation::CalcLocalPowerDensity(unsigned int pos[3])
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{
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double l_pow=0;
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if (m_cell_conductivity==NULL)
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{
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l_pow = abs(m_E_field[0][pos[0]][pos[1]][pos[2]]) * abs(m_J_field[0][pos[0]][pos[1]][pos[2]]);
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l_pow += abs(m_E_field[1][pos[0]][pos[1]][pos[2]]) * abs(m_J_field[1][pos[0]][pos[1]][pos[2]]);
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l_pow += abs(m_E_field[2][pos[0]][pos[1]][pos[2]]) * abs(m_J_field[2][pos[0]][pos[1]][pos[2]]);
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}
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else
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{
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l_pow = m_cell_conductivity[pos[0]][pos[1]][pos[2]]*abs(m_E_field[0][pos[0]][pos[1]][pos[2]]) * abs(m_E_field[0][pos[0]][pos[1]][pos[2]]);
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l_pow += m_cell_conductivity[pos[0]][pos[1]][pos[2]]*abs(m_E_field[1][pos[0]][pos[1]][pos[2]]) * abs(m_E_field[1][pos[0]][pos[1]][pos[2]]);
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l_pow += m_cell_conductivity[pos[0]][pos[1]][pos[2]]*abs(m_E_field[2][pos[0]][pos[1]][pos[2]]) * abs(m_E_field[2][pos[0]][pos[1]][pos[2]]);
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}
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l_pow*=0.5;
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return l_pow;
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}
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float*** SAR_Calculation::CalcLocalSAR(float*** SAR)
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{
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unsigned int pos[3];
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m_Valid=0;
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m_Used=0;
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m_Unused=0;
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m_AirVoxel=0;
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for (pos[0]=0; pos[0]<m_numLines[0]; ++pos[0])
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{
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for (pos[1]=0; pos[1]<m_numLines[1]; ++pos[1])
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{
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for (pos[2]=0; pos[2]<m_numLines[2]; ++pos[2])
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{
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if (m_cell_density[pos[0]][pos[1]][pos[2]]>0)
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{
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++m_Valid;
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SAR[pos[0]][pos[1]][pos[2]] = CalcLocalPowerDensity(pos)/m_cell_density[pos[0]][pos[1]][pos[2]];
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}
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else
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{
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++m_AirVoxel;
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SAR[pos[0]][pos[1]][pos[2]] = 0;
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}
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}
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}
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}
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return SAR;
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}
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int SAR_Calculation::FindFittingCubicalMass(unsigned int pos[3], float box_size, unsigned int start[3], unsigned int stop[3],
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float partial_start[3], float partial_stop[3], double &mass, double &volume, double &bg_ratio, int disabledFace, bool ignoreFaceValid)
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{
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unsigned int mass_iterations = 0;
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double old_mass=0;
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double old_box_size=0;
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bool face_valid;
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bool mass_valid;
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bool voxel_valid;
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//iterate over cubical sizes to find fitting volume to mass
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while (mass_iterations<m_maxMassIterations)
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{
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// calculate cubical mass
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face_valid = GetCubicalMass(pos, box_size/2, start, stop, partial_start, partial_stop, mass, volume, bg_ratio, disabledFace);
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// check if found mass is valid
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mass_valid = abs(mass-m_avg_mass)<=m_massTolerance*m_avg_mass;
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voxel_valid = mass_valid && (face_valid==true) && (bg_ratio<m_maxBGRatio);
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if ((face_valid==false) && (mass<m_avg_mass*(1.0-m_massTolerance)) && (ignoreFaceValid==false))
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{
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// this is an invalid cube with a too small total mass --> increasing the box will not yield a valid cube
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return 1;
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}
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else if ((face_valid==false || bg_ratio>=m_maxBGRatio) && (mass_valid))
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{
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// this is an invalid cube with a valid total mass
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if (ignoreFaceValid)
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return 0;
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return 2;
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}
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if (voxel_valid)
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{
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// valid cube found
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return 0;
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}
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// if no valid or finally invalid cube is found, calculate an alternaive cube size
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if (mass_iterations==0)
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{
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// on first interation, try a relative resize
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old_box_size=box_size;
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box_size*=pow(m_avg_mass/mass,1.0/3.0);
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}
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else
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{
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// on later interations, try a newton approach
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float new_box_size = box_size - (mass-m_avg_mass)/(mass-old_mass)*(box_size-old_box_size);
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old_box_size = box_size;
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box_size = new_box_size;
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}
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old_mass=mass;
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++mass_iterations;
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}
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// m_maxMassIterations iterations are exhausted...
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return -1;
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}
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bool SAR_Calculation::GetCubicalMass(unsigned int pos[3], double box_size, unsigned int start[3], unsigned int stop[3],
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float partial_start[3], float partial_stop[3], double &mass, double &volume, double &bg_ratio, int disabledFace)
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{
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if ((box_size<=0) || isnan(box_size) || isinf(box_size))
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{
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cerr << "SAR_Calculation::GetCubicalMass: critical error: invalid averaging box size!! EXIT" << endl;
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exit(-1);
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}
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bool face_valid=true;
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for (int n=0;n<3;++n)
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{
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// check start position
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start[n]=pos[n];
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partial_start[n]=1;
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float dist=m_cellWidth[n][pos[n]]/2;
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if (disabledFace==2*n)
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dist=box_size;
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else
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{
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while (dist<box_size)
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{
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// box is outside of domain
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if (start[n]==0)
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{
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partial_start[n]=-1;
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break;
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}
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--start[n];
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dist+=m_cellWidth[n][start[n]];
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}
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if (partial_start[n]!=-1)
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{ // box ends inside stop[n] voxel
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partial_start[n]=1-(dist-box_size)/m_cellWidth[n][start[n]];
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}
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if ((partial_start[n]!=-1) && (pos[n]==start[n]))
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partial_start[n]=2*box_size/m_cellWidth[n][start[n]];
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}
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// check stop position
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stop[n]=pos[n];
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partial_stop[n]=1;
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dist=m_cellWidth[n][pos[n]]/2;
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if (disabledFace==2*n+1)
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dist=box_size;
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else
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{
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while (dist<box_size)
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{
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// box is outside of domain
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if (stop[n]==m_numLines[n]-1)
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{
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partial_stop[n]=-1;
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break;
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}
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++stop[n];
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dist+=m_cellWidth[n][stop[n]];
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}
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if (partial_stop[n]!=-1)
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{ // box ends inside stop[n] voxel
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partial_stop[n]=1-(dist-box_size)/m_cellWidth[n][stop[n]];
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}
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if ((partial_stop[n]!=-1) && (pos[n]==stop[n]))
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partial_stop[n]=2*box_size/m_cellWidth[n][stop[n]];
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}
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}
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for (int n=0;n<3;++n)
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{
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if (partial_start[n]==-1)
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face_valid=false;
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if (partial_stop[n]==-1)
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face_valid=false;
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}
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mass = 0;
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volume = 0;
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double bg_volume=0;
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double weight[3];
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unsigned int f_pos[3];
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bool face_intersect[6] = {false,false,false,false,false,false};
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for (f_pos[0]=start[0];f_pos[0]<=stop[0];++f_pos[0])
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{
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weight[0]=1;
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if (f_pos[0]==start[0])
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weight[0]*=abs(partial_start[0]);
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if (f_pos[0]==stop[0])
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weight[0]*=abs(partial_stop[0]);
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for (f_pos[1]=start[1];f_pos[1]<=stop[1];++f_pos[1])
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{
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weight[1]=1;
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if (f_pos[1]==start[1])
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weight[1]*=abs(partial_start[1]);
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if (f_pos[1]==stop[1])
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weight[1]*=abs(partial_stop[1]);
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for (f_pos[2]=start[2];f_pos[2]<=stop[2];++f_pos[2])
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{
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weight[2]=1;
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if (f_pos[2]==start[2])
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weight[2]*=abs(partial_start[2]);
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if (f_pos[2]==stop[2])
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weight[2]*=abs(partial_stop[2]);
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mass += CellMass(f_pos)*weight[0]*weight[1]*weight[2];
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volume += CellVolume(f_pos)*weight[0]*weight[1]*weight[2];
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if (m_cell_density[f_pos[0]][f_pos[1]][f_pos[2]]==0)
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bg_volume += CellVolume(f_pos)*weight[0]*weight[1]*weight[2];
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else
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{
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for (int n=0;n<3;++n)
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{
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if (start[n]==f_pos[n])
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face_intersect[2*n]=true;
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if (stop[n]==f_pos[n])
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face_intersect[2*n+1]=true;
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}
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}
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}
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}
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}
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//check if all bounds have intersected a material boundary
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for (int n=0;n<6;++n)
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face_valid *= face_intersect[n];
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bg_ratio = bg_volume/volume;
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return face_valid;
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}
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float SAR_Calculation::CalcCubicalSAR(float*** SAR, unsigned int pos[3], unsigned int start[3], unsigned int stop[3], float partial_start[3], float partial_stop[3], bool assignUsed)
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{
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double power_mass=0;
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double mass=0;
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double weight[3];
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unsigned int f_pos[3];
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for (f_pos[0]=start[0];f_pos[0]<=stop[0];++f_pos[0])
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{
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weight[0]=1;
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if (f_pos[0]==start[0])
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weight[0]*=abs(partial_start[0]);
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if (f_pos[0]==stop[0])
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weight[0]*=abs(partial_stop[0]);
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for (f_pos[1]=start[1];f_pos[1]<=stop[1];++f_pos[1])
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{
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weight[1]=1;
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if (f_pos[1]==start[1])
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weight[1]*=abs(partial_start[1]);
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if (f_pos[1]==stop[1])
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weight[1]*=abs(partial_stop[1]);
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for (f_pos[2]=start[2];f_pos[2]<=stop[2];++f_pos[2])
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{
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weight[2]=1;
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if (f_pos[2]==start[2])
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weight[2]*=abs(partial_start[2]);
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if (f_pos[2]==stop[2])
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weight[2]*=abs(partial_stop[2]);
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if (m_cell_density[f_pos[0]][f_pos[1]][f_pos[2]]>=0)
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{
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mass += CellMass(f_pos)*weight[0]*weight[1]*weight[2];
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power_mass += CalcLocalPowerDensity(f_pos) * CellVolume(f_pos)*weight[0]*weight[1]*weight[2];
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}
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}
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}
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}
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float vx_SAR = power_mass/mass;
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if (SAR==NULL)
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return vx_SAR;
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SAR[pos[0]][pos[1]][pos[2]]=vx_SAR;
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if (assignUsed==false)
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return vx_SAR;
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// assign SAR to all used voxel
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bool is_partial[3];
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for (f_pos[0]=start[0];f_pos[0]<=stop[0];++f_pos[0])
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{
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if ( ((f_pos[0]==start[0]) && (partial_start[0]!=1)) || ((f_pos[0]==stop[0]) && (partial_stop[0]!=1)) )
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is_partial[0]=true;
|
|
else
|
|
is_partial[0]=false;
|
|
|
|
for (f_pos[1]=start[1];f_pos[1]<=stop[1];++f_pos[1])
|
|
{
|
|
if ( ((f_pos[1]==start[1]) && (partial_start[1]!=1)) || ((f_pos[1]==stop[1]) && (partial_stop[1]!=1)) )
|
|
is_partial[1]=true;
|
|
else
|
|
is_partial[1]=false;
|
|
|
|
for (f_pos[2]=start[2];f_pos[2]<=stop[2];++f_pos[2])
|
|
{
|
|
if ( ((f_pos[2]==start[2]) && (partial_start[2]!=1)) || ((f_pos[2]==stop[2]) && (partial_stop[2]!=1)) )
|
|
is_partial[2]=true;
|
|
else
|
|
is_partial[2]=false;
|
|
|
|
if ( (!is_partial[0] && !is_partial[1] && !is_partial[2]) || m_markPartialAsUsed)
|
|
{
|
|
if (!m_Vx_Valid[f_pos[0]][f_pos[1]][f_pos[2]] && (m_cell_density[f_pos[0]][f_pos[1]][f_pos[2]]>0))
|
|
{
|
|
m_Vx_Used[f_pos[0]][f_pos[1]][f_pos[2]]=true;
|
|
SAR[f_pos[0]][f_pos[1]][f_pos[2]]=max(SAR[f_pos[0]][f_pos[1]][f_pos[2]], vx_SAR);
|
|
}
|
|
}
|
|
}
|
|
}
|
|
}
|
|
return vx_SAR;
|
|
}
|
|
|
|
|
|
float*** SAR_Calculation::CalcAveragedSAR(float*** SAR)
|
|
{
|
|
unsigned int pos[3];
|
|
m_Vx_Used = Create3DArray<bool>(m_numLines);
|
|
m_Vx_Valid = Create3DArray<bool>(m_numLines);
|
|
|
|
double voxel_volume;
|
|
double total_mass;
|
|
unsigned int start[3];
|
|
unsigned int stop[3];
|
|
float partial_start[3];
|
|
float partial_stop[3];
|
|
double bg_ratio;
|
|
int EC=0;
|
|
|
|
// debug counter
|
|
unsigned int cnt_case1=0;
|
|
unsigned int cnt_case2=0;
|
|
unsigned int cnt_NoConvergence=0;
|
|
|
|
m_Valid=0;
|
|
m_Used=0;
|
|
m_Unused=0;
|
|
m_AirVoxel=0;
|
|
|
|
for (pos[0]=0; pos[0]<m_numLines[0]; ++pos[0])
|
|
{
|
|
for (pos[1]=0; pos[1]<m_numLines[1]; ++pos[1])
|
|
{
|
|
for (pos[2]=0; pos[2]<m_numLines[2]; ++pos[2])
|
|
{
|
|
if (m_cell_density[pos[0]][pos[1]][pos[2]]==0)
|
|
{
|
|
SAR[pos[0]][pos[1]][pos[2]] = 0;
|
|
++m_AirVoxel;
|
|
continue;
|
|
}
|
|
|
|
// guess an initial box size and find a fitting cube
|
|
EC = FindFittingCubicalMass(pos, pow(m_avg_mass/m_cell_density[pos[0]][pos[1]][pos[2]],1.0/3.0)/2, start, stop,
|
|
partial_start, partial_stop, total_mass, voxel_volume, bg_ratio, -1, m_IgnoreFaceValid);
|
|
|
|
if (EC==0)
|
|
{
|
|
m_Vx_Valid[pos[0]][pos[1]][pos[2]] = true;
|
|
m_Vx_Used[pos[0]][pos[1]][pos[2]] = true;
|
|
++m_Valid;
|
|
CalcCubicalSAR(SAR, pos, start, stop, partial_start, partial_stop, true);
|
|
}
|
|
else if (EC==1)
|
|
++cnt_case1;
|
|
else if (EC==2)
|
|
++cnt_case2;
|
|
else if (EC==-1)
|
|
++cnt_NoConvergence;
|
|
else
|
|
cerr << "other EC" << EC << endl;
|
|
}
|
|
}
|
|
}
|
|
if (cnt_NoConvergence>0)
|
|
{
|
|
cerr << "SAR_Calculation::CalcAveragedSAR: Warning, for some voxel a valid averaging cube could not be found (no convergence)... " << endl;
|
|
}
|
|
if (m_DebugLevel>0)
|
|
{
|
|
cerr << "Number of invalid cubes (case 1): " << cnt_case1 << endl;
|
|
cerr << "Number of invalid cubes (case 2): " << cnt_case2 << endl;
|
|
cerr << "Number of invalid cubes (failed to converge): " << cnt_NoConvergence << endl;
|
|
}
|
|
|
|
// count all used and unused etc. + special handling of unused voxels!!
|
|
m_Used=0;
|
|
m_Unused=0;
|
|
for (pos[0]=0;pos[0]<m_numLines[0];++pos[0])
|
|
{
|
|
for (pos[1]=0;pos[1]<m_numLines[1];++pos[1])
|
|
{
|
|
for (pos[2]=0;pos[2]<m_numLines[2];++pos[2])
|
|
{
|
|
if (!m_Vx_Valid[pos[0]][pos[1]][pos[2]] && m_Vx_Used[pos[0]][pos[1]][pos[2]])
|
|
++m_Used;
|
|
if ((m_cell_density[pos[0]][pos[1]][pos[2]]>0) && !m_Vx_Valid[pos[0]][pos[1]][pos[2]] && !m_Vx_Used[pos[0]][pos[1]][pos[2]])
|
|
{
|
|
++m_Unused;
|
|
|
|
SAR[pos[0]][pos[1]][pos[2]] = 0;
|
|
double unused_volumes[6];
|
|
float unused_SAR[6];
|
|
|
|
double min_Vol=FLT_MAX;
|
|
|
|
// special handling of unused voxels:
|
|
for (int n=0;n<6;++n)
|
|
{
|
|
EC = FindFittingCubicalMass(pos, pow(m_avg_mass/m_cell_density[pos[0]][pos[1]][pos[2]],1.0/3.0)/2, start, stop,
|
|
partial_start, partial_stop, total_mass, unused_volumes[n], bg_ratio, n, true);
|
|
if ((EC!=0) && (EC!=2))
|
|
{
|
|
// this should not happen
|
|
cerr << "SAR_Calculation::CalcAveragedSAR: Error handling unused voxels, can't find fitting cubical averaging volume' " << endl;
|
|
unused_SAR[n]=0;
|
|
}
|
|
else
|
|
{
|
|
unused_SAR[n]=CalcCubicalSAR(NULL, pos, start, stop, partial_start, partial_stop, false);
|
|
min_Vol = min(min_Vol,unused_volumes[n]);
|
|
}
|
|
}
|
|
for (int n=0;n<6;++n)
|
|
{
|
|
if (unused_volumes[n]<=m_UnusedRelativeVolLimit*min_Vol)
|
|
SAR[pos[0]][pos[1]][pos[2]] = max(SAR[pos[0]][pos[1]][pos[2]],unused_SAR[n]);
|
|
}
|
|
}
|
|
}
|
|
}
|
|
}
|
|
|
|
if (m_Valid+m_Used+m_Unused+m_AirVoxel!=m_numLines[0]*m_numLines[1]*m_numLines[2])
|
|
{
|
|
cerr << "SAR_Calculation::CalcAveragedSAR: critical error, mismatch in voxel status count... EXIT" << endl;
|
|
exit(1);
|
|
}
|
|
|
|
if (m_DebugLevel>0)
|
|
cerr << "SAR_Calculation::CalcAveragedSAR: Stats: Valid=" << m_Valid << " Used=" << m_Used << " Unused=" << m_Unused << " Air-Voxel=" << m_AirVoxel << endl;
|
|
|
|
return SAR;
|
|
}
|
|
|
|
double SAR_Calculation::CellVolume(unsigned int pos[3])
|
|
{
|
|
if (m_cell_volume)
|
|
return m_cell_volume[pos[0]][pos[1]][pos[2]];
|
|
|
|
double volume=1;
|
|
for (int n=0;n<3;++n)
|
|
volume*=m_cellWidth[n][pos[n]];
|
|
return volume;
|
|
}
|
|
|
|
double SAR_Calculation::CellMass(unsigned int pos[3])
|
|
{
|
|
return m_cell_density[pos[0]][pos[1]][pos[2]]*CellVolume(pos);
|
|
}
|
|
|