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ProcessFields now writes TD data into HDF5 group: /FieldData/TD + adapted matlab HDF5 

Signed-off-by: Thorsten Liebig <Thorsten.Liebig@gmx.de>
pull/1/head
Thorsten Liebig 2010-12-20 10:40:33 +01:00
parent 0973f80680
commit 661410cd66
5 changed files with 73 additions and 26 deletions
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4
Common/processfields.cpp
View File

@ -87,6 +87,8 @@ void ProcessFields::InitProcess()
delete group;
group = new H5::Group( file->createGroup( "/FieldData/FD" ));
delete group;
group = new H5::Group( file->createGroup( "/FieldData/TD" ));
delete group;
delete file;
}
}
@ -423,7 +425,7 @@ bool ProcessFields::DumpVectorArray2HDF5(string filename, string name, FDTD_FLOA
H5::H5File file( FILE_NAME, H5F_ACC_RDWR );
H5::Group group( file.openGroup( "/FieldData" ));
H5::Group group( file.openGroup( "/FieldData/TD" ));
hsize_t dimsf[4]; // dataset dimensions

16
matlab/GetField_Interpolation.m
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@ -49,11 +49,19 @@ mesh_i.lines{1} = x_i;
mesh_i.lines{2} = y_i;
mesh_i.lines{3} = z_i;
NULL = zeros(numel(x_i),numel(y_i),numel(z_i),3);
for n=1:numel(field.values)
field_i.values{n} = NULL;
if (isfield(field,'TD'))
field_i.TD = interpolate_fields(field.TD,x,y,z, x_i, y_i, z_i);
field_i.TD.time = field.TD.time;
end
clear NULL;
if (isfield(field,'FD'))
field_i.FD = interpolate_fields(field.FD,x,y,z, x_i, y_i, z_i);
field_i.FD.freq = field.FD.freq;
end
return
function field_i = interpolate_fields(field, x,y,z, x_i, y_i, z_i)
% matlab cannot handle 3D data to be 2D data, workaround for these cases
if (numel(x)==1)

21
matlab/GetField_TD2FD.m
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@ -1,5 +1,5 @@
function field_FD = GetField_TD2FD(field_TD, freq)
% function field_FD = GetField_TD2FD(field_TD, freq)
function field = GetField_TD2FD(field, freq)
% function field = GetField_TD2FD(field, freq)
%
% Transforms time-domain field data into the frequency domain
% Autocorrects the half-timestep offset of the H-field
@ -15,20 +15,27 @@ function field_FD = GetField_TD2FD(field_TD, freq)
%
% See also ReadHDF5FieldData
t = field_TD.time;
if (~isfield(field,'TD'))
warning('openEMS:GetField_TD2FD','field has no time domain data... skipping FD transformation...');
return
end
field_FD.freq = freq;
t = field.TD.time;
clear field.FD
field.FD.freq = freq;
for nf = 1:numel(freq)
field_FD.values{nf} = 0;
field.FD.values{nf} = 0;
end
numTS = numel(field_TD.values);
numTS = numel(field.TD.values);
for n=1:numTS
for nf = 1:numel(freq)
f = freq(nf);
field_FD.values{nf} = field_FD.values{nf} + 2/numTS * field_TD.values{n}.*exp(-1i*2*pi*f*t(n));
field.FD.values{nf} = field.FD.values{nf} + 2/numTS * field.TD.values{n}.*exp(-1i*2*pi*f*t(n));
% t(n) is absolute time and therefore the half-timestep offset of
% the H-field is automatically compensated
% openEMS output: E-fields start at t=0

16
matlab/PlotHDF5FieldData.m
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@ -27,9 +27,9 @@ fields = ReadHDF5FieldData(file);
if (mesh.type==0)
% cartesian mesh
[X Y Z] = meshgrid(mesh.lines{1},mesh.lines{2},mesh.lines{3});
for n=1:numel(fields.values)
for n=1:numel(fields.TD.values)
% since Matlab 7.1SP3 the field needs to be reordered
fields.values{n} = permute(fields.values{n},[2 1 3 4]); % reorder: y,x,z (or y,x)
fields.TD.values{n} = permute(fields.TD.values{n},[2 1 3 4]); % reorder: y,x,z (or y,x)
end
else
disp(['PlotHDF5FieldData:: Error: unknown mesh type ' num2str(mesh.type)]);
@ -38,14 +38,14 @@ end
max_amp = 0;
if (component>0)
for n=1:numel(fields.values)
Field{n} = fields.values{n}(:,:,:,component);
for n=1:numel(fields.TD.values)
Field{n} = fields.TD.values{n}(:,:,:,component);
end
else
for n=1:numel(fields.values)
fx = fields.values{n}(:,:,:,1);
fy = fields.values{n}(:,:,:,2);
fz = fields.values{n}(:,:,:,3);
for n=1:numel(fields.TD.values)
fx = fields.TD.values{n}(:,:,:,1);
fy = fields.TD.values{n}(:,:,:,2);
fz = fields.TD.values{n}(:,:,:,3);
Field{n} = sqrt(fx.^2 + fy.^2 + fz.^2);
end
end

42
matlab/ReadHDF5FieldData.m
View File

@ -25,21 +25,51 @@ if isOctave
end
info = hdf5info(file);
TD.names = {};
FD.names = {};
hdf_fielddata = [];
for n=1:numel(info.GroupHierarchy.Groups)
if strcmp(info.GroupHierarchy.Groups(n).Name,'/FieldData')
for m=1:numel(info.GroupHierarchy.Groups(n).Datasets)
names{m} = info.GroupHierarchy.Groups(n).Datasets(m).Name;
hdf_fielddata.time(m) = double(info.GroupHierarchy.Groups(n).Datasets(m).Attributes.Value);
%found /FieldData, look for either TD or FD data
for nGroup=1:numel(info.GroupHierarchy.Groups(n).Groups)
%search and read TD data
if strcmp(info.GroupHierarchy.Groups(n).Groups(nGroup).Name,'/FieldData/TD')
for m=1:numel(info.GroupHierarchy.Groups(n).Groups(nGroup).Datasets)
TD.names{m} = info.GroupHierarchy.Groups(n).Groups(nGroup).Datasets(m).Name;
hdf_fielddata.TD.time(m) = double(info.GroupHierarchy.Groups(n).Groups(nGroup).Datasets(m).Attributes.Value);
end
end
%search and read FD data
if strcmp(info.GroupHierarchy.Groups(n).Groups(nGroup).Name,'/FieldData/FD')
for m=1:numel(info.GroupHierarchy.Groups(n).Groups(nGroup).Datasets)
FD.names{m} = info.GroupHierarchy.Groups(n).Groups(nGroup).Datasets(m).Name;
FD.freq(m) = double(info.GroupHierarchy.Groups(n).Groups(nGroup).Datasets(m).Attributes.Value);
end
end
end
end
end
hdf_fielddata.names = names;
for n=1:numel(names)
hdf_fielddata.values{n} = double(hdf5read(file,names{n}));
if (numel(TD.names)>0)
for n=1:numel(TD.names)
hdf_fielddata.TD.values{n} = double(hdf5read(file,TD.names{n}));
end
end
if (numel(FD.names)>0)
Nr_freq = numel(FD.names)/2;
for n=1:Nr_freq
name = ['/FieldData/FD/f' int2str(n-1) '_real'];
ind = find(strcmp(FD.names,name));
hdf_fielddata.FD.values{n} = double(hdf5read(file,FD.names{ind}));
hdf_fielddata.FD.freq(n) = FD.freq(ind);
name = ['/FieldData/FD/f' int2str(n-1) '_imag'];
ind = find(strcmp(FD.names,name));
hdf_fielddata.FD.values{n} = hdf_fielddata.FD.values{n} + 1j*double(hdf5read(file,FD.names{ind}));
end
end
function hdf_fielddata = ReadHDF5FieldData_octave(file)